prediction route complete

Cargo.lock

@@ -368,6 +368,7 @@ dependencies = [
  "mongodb",
  "pyo3",
  "serde",
+ "serde_json",
  "tokio",
  "vrd 0.0.7",
 ]

Cargo.toml

@@ -13,5 +13,6 @@ http = "1.1.0"
 mongodb = { version = "2.8.2", features = ["bson-chrono-0_4", "tokio-runtime"]}
 pyo3 = { version = "0.21.2", features = ["auto-initialize"]}
 serde = "1.0.203"
+serde_json = "1.0.117"
 tokio = "1.38.0"
 vrd = "0.0.7"

src/account.rs

@@ -1,17 +1,14 @@
 pub mod db;
 
+use anyhow::Result;
 use axum::{
-    body::Body,
+    body::Body, response::{IntoResponse, Response}, routing::{get, post}, Json, Router
-    Json, 
-    response::Response,
-    Router,
-    routing::{get, post}
 };
 use crate::ApiResult;
 use db::{get_users, User};
 use http::{header::HeaderMap, StatusCode};
 use mongodb::bson::{doc, oid::ObjectId};
-
+use serde_json::json;
 
 pub fn router() -> Router {
     Router::new()
@@ -31,7 +28,19 @@ pub fn router() -> Router {
         )
 }
 
-pub async fn get_sign_in(Json(body): Json<User>) -> ApiResult {
+pub async fn auth(api: &str) -> Result<Option<User>> {
+    let db = get_users().await?;
+
+    let query = doc! {
+        "$expr": { "$eq": ["$_auth._api", ObjectId::parse_str(api)?] }
+    };
+
+    Ok(db.find_one(query, None).await?)
+
+}
+
+
+async fn get_sign_in(Json(body): Json<User>) -> ApiResult {
     let db = get_users().await?;
     let query = doc! {
         "$expr": { "$eq": ["$username", body.username] }
@@ -41,7 +50,9 @@ pub async fn get_sign_in(Json(body): Json<User>) -> ApiResult {
         Some(user) => {  
             Ok(Response::builder()
                 .status(StatusCode::CREATED)
-                .body(Body::from(user.auth.unwrap().salt.unwrap()))?)
+                .body(Json(json!({
+                    "_salt": user.auth.unwrap().salt.unwrap()
+                })).into_response().into_body())?)
         },
         None => {
             Ok(Response::builder()
@@ -51,7 +62,7 @@ pub async fn get_sign_in(Json(body): Json<User>) -> ApiResult {
     }
 }
 
-pub async fn post_sign_in(Json(body): Json<User>) -> ApiResult {
+async fn post_sign_in(Json(body): Json<User>) -> ApiResult {
     let db = get_users().await?;
     let api = ObjectId::new();
     let query = doc! {
@@ -74,7 +85,9 @@ pub async fn post_sign_in(Json(body): Json<User>) -> ApiResult {
 
             Ok(Response::builder()
                 .status(StatusCode::OK)
-                .body(Body::from(api.to_string()))?)
+                .body(Json(json!({
+                    "_api_key": api.to_string()
+                })).into_response().into_body())?)
         },
         None => {
             Ok(Response::builder()
@@ -84,7 +97,7 @@ pub async fn post_sign_in(Json(body): Json<User>) -> ApiResult {
     }
 }
 
-pub async fn post_sign_up(Json(body): Json<User>) -> ApiResult {
+async fn post_sign_up(Json(body): Json<User>) -> ApiResult {
     let db = get_users().await?;
     let auth = body.clone().auth.unwrap_or_default();
     let query = doc! {
@@ -114,7 +127,7 @@ pub async fn post_sign_up(Json(body): Json<User>) -> ApiResult {
 }
 
 
-pub async fn post_sign_out(headers: HeaderMap) -> ApiResult {
+async fn post_sign_out(headers: HeaderMap) -> ApiResult {
     let db = get_users().await?;
     let api = headers["api_key"].to_str()?;
 
@@ -127,7 +140,7 @@ pub async fn post_sign_out(headers: HeaderMap) -> ApiResult {
         }
     };
 
-    match db.find_one(query.clone(), None).await? {
+    match auth(api).await? {
         Some(_user) => {
             db.update_one(query, update, None).await?;
             Ok(Response::builder()
@@ -141,7 +154,6 @@ pub async fn post_sign_out(headers: HeaderMap) -> ApiResult {
         },
     }
 }
-
 pub async fn post_backup() {} //TODO: Backup
 
 pub async fn get_restore() {} //TODO: restore

src/account/db.rs

@@ -7,7 +7,10 @@ use mongodb::{
 pub async fn get_db_client() -> Result<Client> {
     let username = std::env::var("DB_USERNAME")?;
     let password = std::env::var("DB_PASSWORD")?;
-    Ok(Client::with_uri_str(format!("mongodb://{username}:{password}@db:27017")).await?)
+    let host = std::env::var("DB_HOST")?;
+    let port = std::env::var("DB_PORT")?;
+
+    Ok(Client::with_uri_str(format!("mongodb://{username}:{password}@{host}:{port}")).await?)
 }
 
 pub async fn get_database() -> Result<Database> {

src/lib.rs

@@ -13,8 +13,8 @@ pub type ApiResult = Result<Response, AppError>;
 pub async fn run() -> Result<()> {
     
     let app = router();
-    
+    let port = std::env::var("API_PORT")?; 
-    let listener = tokio::net::TcpListener::bind("127.0.0.1:3000").await.unwrap();
+    let listener = tokio::net::TcpListener::bind(format!("127.0.0.1:{port}")).await.unwrap();
     axum::serve(listener, app).await.unwrap();
     
 
@@ -28,7 +28,7 @@ fn router() -> axum::Router {
         .nest("/predict", model::router())
 }
 
-struct AppError(anyhow::Error);
+pub struct AppError(anyhow::Error);
 
 impl IntoResponse for AppError {
     fn into_response(self) -> Response {

src/model.rs

@@ -1,9 +1,18 @@
 use axum::{
-    body::Body,
+    body::{Body, Bytes},
-    response::Response
+    response::{IntoResponse, Json, Response}
 };
-use crate::ApiResult;
+use crate::{
-use pyo3::prelude::*;
+    ApiResult,
+    account::auth
+};
+use http::{HeaderMap, StatusCode};
+use pyo3::{
+    prelude::*,
+    types::PyTuple
+
+};
+use serde::{Serialize, Deserialize};
 
 const MODULE: &str = include_str!("model/model.py");
 const MODEL: &[u8] = include_bytes!("model/model.keras");
@@ -15,16 +24,46 @@ pub fn router() -> axum::Router {
         )
 }
 
-async fn get_predict() -> ApiResult {
+#[derive(Serialize, Deserialize)]
-    //TODO: If api key is correct
+struct Prediction {
-    // Extract image from body of req
+    benign_probability: f64,
-    let result = Python::with_gil(|py| -> PyResult<()> {
+    malignant_probability: f64,
-        let predict: Py<PyAny> = PyModule::from_code_bound(py, MODULE, "model.py", "model")?
+}
-            .getattr("predict")?.into();
+
-
+async fn get_predict(headers: HeaderMap, body: Bytes) -> ApiResult {
-        //TODO: Get result and return it
+    let api = headers["api_key"].to_str()?;
-        Ok(())
+    
-    });
+    match auth(api).await? {
-
+        Some(_user) => {
-    Ok(Response::builder().body(Body::from(""))?)
+            let prediction = predict(body).await?; 
+
+            Ok(Response::builder()
+                .status(StatusCode::OK)
+                .body(Json(prediction).into_response().into_body())?)
+
+        },
+        None => {
+            Ok(Response::builder()
+                .status(StatusCode::INTERNAL_SERVER_ERROR)
+                .body(Body::from("Prediction could not be completed"))?)
+        },
+    } 
+
+    
+}
+
+async fn predict(image: Bytes) -> PyResult<Prediction> {
+    Python::with_gil(|py| -> PyResult<Prediction> {
+                let predict: Py<PyAny> = PyModule::from_code_bound(py, MODULE, "model.py", "model")?
+                    .getattr("predict")?.into();
+        
+                let results: &PyTuple = predict.call1(py, (MODEL, image.into_py(py)))?.extract(py)?;
+                let benign_probability: f64 = results.get_item(0)?.extract()?;
+                let malignant_probability: f64 = results.get_item(1)?.extract()?;
+
+                Ok(Prediction { 
+                    benign_probability, 
+                    malignant_probability,
+                })
+            })
 }

src/model/model.py

@@ -26,5 +26,6 @@ def process_model_bytes(bytes):
 def predict(model_bytes, image_bytes):
     image = preprocess_image_bytes(image_bytes)
     model = process_model_bytes(model_bytes)
+    result = model.predict(image)
 
-    return model.predict(image)
+    return result[0], result[1]